Kirchman Student Publications
Students were the first author on the following publications:
Chin-Leo, G. and D.L.
Kirchman. 1988. Estimating bacterial production in marine waters from
the simultaneous incorporation of thymidine and leucine. Appl. Environ.
Microbiol. 54:1934-1939.
Chin-Leo, G. and D.L. Kirchman. 1990. Unbalanced growth in natural
assemblages of marine bacterioplankton. Mar. Ecol. Prog. Ser. 63:1-8.
Keil,
R.G. and D.L. Kirchman. 1990. Dissolved combined amino acids in
marine waters as determined by a vapor- phase hydrolysis method. Mar.
Chem. 33:243-259.
Keil, R.G. and D.L. Kirchman. 1990. Contribution of dissolved free
amino acids and ammonium to the nitrogen requirements of heterotrophic
bacterioplankton. Mar. Ecol. Prog. Ser. 73:1-10.
Montgomery, M.T., N.W. Welschmeyer, and D.L. Kirchman. 1990. A simple assay for chitin: Application to sediment trap samples from the Subarctic Pacific. Mar. Ecol. Prog. Ser. 64:301-308.
Hoch, M.P., M. Fogel, and D.L. Kirchman. 1992. Isotope fractionation associated with ammonium uptake by the marine bacterium Vibrio harveyi. Limnol. Oceanogr. 37:1447-1459.
Keil, R.G. and D.L. Kirchman. 1992. Bacterial degradation of methylated
protein and uniformly labelled protein. Appl. Environ. Microbiol.
58:1374-1375.
Urban, E.R.J. and D.L. Kirchman. 1992. Effect of kaolinite clay on
the feeding activity of the eastern oyster Crassostrea virginica
(Gmelin). J. Exp. Mar. Biol. Ecol. 160:47-60.
*Keil, R.G. and D.L. Kirchman. 1993. Dissolved combined amino acids:
chemical form and utilization by marine bacteria. Limnol. Oceanogr.
38:1256-1270.
Montgomery, M.T. and D.L. Kirchman. 1993. Role of chitin-binding proteins
in the specific attachment of the marine bacterium Vibrio harveyi
to chitin. Appl. Environ. Microbiol. 59:373-379.
Hoch, M.P. and D.L. Kirchman. 1993. Seasonal and inter-annual variability
in bacterial production and biomass in a temperate estuary. Mar. Ecol.
Progr. Ser. 98:283-295.
Hoch, M.P., M.L. Fogel and D.L. Kirchman. 1994. Isotope fractionation
during ammonium uptake by marine microbial assemblages. Geomicrobiology
Journal. 12:113-127
Keil, R.G. and D.L. Kirchman. 1994. Abiotic transformation of labile
protein to refractory protein in sea water. Mar. Chem. 45:187-196.
Montgomery, M.T. and D.L. Kirchman. 1994. Induction of chitin-binding
proteins in the specific attachment of the marine bacterium Vibrio
harveyi to chitin. Appl. Environ. Microbiol. 60:4284-4288.
Hoch, M. And D.L. Kirchman. 1995. Ammonium uptake by heterotrophic
bacteria in the Delaware estuary and adjacent coastal waters. Limnol.
Oceanogr. 40:886-897. (abstract)
Rich, J., H.W. Ducklow, and D.L.
Kirchman. 1996. Concentrations and uptake of neutral monosaccharides
along 140°W in the equatorial Pacific: contribution of glucose
to heterotrophic bacterial activity and the DOM flux. Limnol. Oceanogr.
41:595-604 (abstract)
Borch, N.H. and D.L. Kirchman. 1997. Concentration and composition
of dissolved neutral sugars in seawater determined by HPLC-PAD. Mar.
Chem. 57:85-95. (abstract)
Rich, J., M. Gosselin, E. Sherr, B. Sherr and D.L. Kirchman. 1998.
Bacterial production and the uptake of dissolved organic matter in
the central Arctic Ocean. Deep-Sea Research. 44:1645-1663. (abstract)
Borch, N.H. and D.L. Kirchman. 1999. Protection of labile organic
matter from bacterial degradation by submicron particles. Aquatic
Microbial Ecology 16:265-272. (abstract)
*Keil, R.G. and D.L. Kirchman. 1999. Utilization of dissolved protein
and amino acids in the Northern Sargasso Sea. Aquatic Microbial Ecology.
18:293-300 (abstract)
*Castle, D., and D. L. Kirchman. 2004. Composition of estuarine bacterial communities assessed by denaturing gradient gel electrophoresis and fluorescence in situ hybridization. Limnol. Oceanogr.: Methods 2:303–314.
Malmstrom, R.R., R.P. Kiene, and D.L. Kirchman. 2004. Identification and enumeration of bacteria assimilating dimethylsulfoniopropionate (DMSP) in the North Atlantic and Gulf of Mexico. Limnol. Oceanogr. 49:597-606.
Malmstrom, R.R., R P. Kiene, M T. Cottrell, and D.L. Kirchman. 2004. Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic Ocean. Appl. Environ. Microbiol. 70:4129-4135.
Preen, K. E., and D.L. Kirchman. 2004. Microbial respiration and production in the Delaware Estuary.
Aquat. Microb. Ecol. 37:109-119.
Hare, C. E., E. Demir, K. J. Coyne, S. C. Cary, D. L. Kirchman, and D. A. Hutchins. 2005. A bacterium that inhibits the growth of Pfiesteria piscicida and other dinoflagellates. Harmful Algae 4 : 221-234.
Elifantz, H.,R., R.R. Malmstrom*, M.T., Cottrell, and D.L. Kirchman. 2005. Assimilation of polysaccharides and glucose by major bacterial groups in the Delaware Estuary. Appl. Environ. Microbiol. 71: 7799-7805.
Malmstrom, R.R., M.T. Cottrell, H. Elifantz*, and D.L. Kirchman. 2005. Biomass production and assimilation of dissolved organic matter by SAR11 bacteria in the Northwest Atlantic Ocean. Appl. Environ. Microbiol. 70 (6): 2979-2986.
Malmstrom, R.R., R.P. Kiene, M. Vila, and D.L.
Kirchman. 2005. Dimethylsulfoniopropionate (DMSP)assimilation by Synechococcus in
the Gulf of Mexico. Limnol. Oceanogr. 50:1924-1931.
Waidner, L. A., and D. L. Kirchman. 2005. Aerobic anoxygenic photosynthesis genes and operons in uncultured bacteria in the Delaware River. Environmental Microbiology 7:1896-1908.
Castle, D., M. T. Montgomery, and D. L. Kirchman. 2006. Effects of naphthalene on microbial community composition in the Delaware Estuary. FEMS Microbiol. Ecol. 56: 55-63.
Jones, P.R., M. T. Cottrell, D L. Kirchman, and S.C. Dexter. 2007. Bacterial community structure of biofilms on artificial surfaces in an estuary. Microbial. Ecol. 53: 153–162.
Malmstrom, R.R., M.T. Cottrell, and D.L. Kirchman. 2007. Diversity and abundance of closely-related bacteria in the western Arctic Ocean. Aquat. Microb. Ecol. 47: 45–55.
Michelou, V. K., M. T. Cottrell, and D. L. Kirchman. 2007. Light-stimulated bacterial production and amino acid assimilation by cyanobacteria and other microbes in the North Atlantic Ocean. Appl. Environ. Microbiol. 73: 5539-5546.
Waidner, L. A., and D. L. Kirchman. 2007. Aerobic anoxygenic phototrophic bacteria attached to particles in turbid waters of the Delaware and Chesapeake estuaries. Appl. Environ. Microbiol. 73: 3936-3944.
Elifantz, H., L. A. Waidner*, M. T. Cottrell, and D. L. Kirchman. 2008. Diversity and abundance of glycosyl hydrolase family 5 in the north Atlantic Ocean. FEMS Microbiol. Ecol. 63:316-327.
Waidner, L. A., and D. L. Kirchman. 2008. Diversity and distribution of ecotypes of the aerobic anoxygenic phototrophy gene, pufM, in the Delaware Estuary. Applied and Environmental Microbiology 74:4012-4021.
Straza, T. R. A., M. T. Cottrell*, H. W. Ducklow, and D. L. Kirchman. 2009. Geographic and phylogenetic variation in bacterial biovolume as revealed by protein and nucleic acid staining. Appl. Environ. Microbiol. 75:4028-4034.
Straza, T.R.A., H.W. Ducklow, A.E. Murray, and D.L. Kirchman. 2010. Abundance and single-cell activity of bacterial groups in Antarctic coastal waters. Limnol. Oceanogr. 55:2526-2536.
Christman, G.D, M.T. Cottrell, B.N. Popp, E. Gier, and D.L. Kirchman. 2011. Abundance, diversity, and activity of ammonia-ozaidizing prokaryotes in the coastal Arctic Ocean in summer and winter. Appl. Enviorn. Microb. 77:2026-2034
Michelou, V., M.W. Lomas, and D.L. Kirchman. 2011. Phosphate and adenosine-5'-triphosphate uptake by cyanobacteria and heterotrophic bacteria in the Sargasso Sea. Limnol. Oceanogr. 56:323-332
Straza, T.R.A. and D.L. Kirchman. 2011. Single-cell response of bacterial groups to light and other environmental factors in the Delaware Bay, USA. Aquat. Microb. Ecol. 62:267-277.
*Student in Kirchman Lab
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This page last updated 1 April 2011
