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Cottrell Publications

Complete publication list for Matthew T. Cottrell

Peer Reviewed Journals                                        

Revised August 23, 2013

Suttle, C. A., A. M. Chan, and M. T. Cottrell. 1990. Infection of phytoplankton by viruses and reduction of primary productivity. Nature 347:467-469.

Suttle, C. A., A. M. Chan, and M. T. Cottrell. 1991. Use of ultrafiltration to isolate viruses from seawater which are pathogens of marine phytoplankton. Appl. Environ. Microbiol. 57:721-726.

Cottrell, M. T., and C. A. Suttle. 1991. Wide-spread occurrence and clonal variation in viruses which cause lysis of a cosmopolitan, eukaryotic marine phytoplankter, Micromonas pusilla. Mar. Ecol. Prog. Ser. 78:1-9.

Cottrell, M. T., and C. A. Suttle. 1993. Production of axenic cultures of Micromonas pusilla (Prasinophyceae) using antibiotics. J. Phycol. 29:385-387.

Cottrell, M. T., and C. A. Suttle. 1995. Genetic diversity of algal viruses which lyse the photosynthetic picoflagellate Micromonas pusilla (Prasinophyceae). Appl. Environ. Microbiol. 61:3088-3091.

Cottrell, M. T., and C. A. Suttle. 1995. Dynamics of a lytic virus infecting the photosynthetic marine picoflagellate Micromonas pusilla. Limnol. Oceanogr. 40:730-739.

Cary, S. C., M. T. Cottrell, J. L. Stein, F. Camacho, and D. Desbruyères. 1997. Molecular identification and localization of filamentous symbiotic bacteria associated with the hydrothermal vent annelid Alvinella pompejana. Appl. Environ. Microbiol. 63:1124-1130.

Hill, R. W., B. A. White, M. T. Cottrell, and J. W. H. Dacey. 1998. Virus-mediated total release of dimethylsulfoniopropionate from marine phytoplankton: a potential climate process. Aquat. Microb. Ecol. 14:1-6.

Cottrell, M. T., and S. C. Cary. 1999. Diversity of dissimilatory bisulfite reductase genes of bacteria associated with the deep-sea hydrothermal vent polychaete annelid Alvinella pompejana. Appl. Environ. Microbiol. 65:1127-1132.

Cottrell, M.T., J.A. Moore, and D.L. Kirchman. 1999. Chitinases from uncultured marine microorganisms. Appl. Envir. Microbiol. 65:2553-2557.

Cottrell, M.T. and D.L. Kirchman. 2000. Natural assemblages of marine proteobacteria and members of Cytophaga-Flavobacter cluster consuming low- and high-molecular weight dissolved organic matter. Appl. Environ. Microb. 66:1692-1697.

Cottrell, M.T., D.N. Wood, L.Y. Yu, and D.L. Kirchman. 2000. Selected chitinase genes in cultured and uncultured marine bacteria in the α- and γ-subclasses of the proteobacteria. Appl. Environ. Microbiol. 66:1195-1201.

Kirchman, D.L., B. Meon, M.T. Cottrel, D.A. Hutchins, D. Weeks, and K.W. Bruland. 2000. Carbon versus iron limitation of bacterial growth in the California upwelling regime. Limnol. Oceanogr. 45:1681-1688.

Cottrell, M.T. and D.L. Kirchman. 2000. Community composition of marine bacterioplankton determined by 16S rDNA gene clone libraries and fluorescence in situ hybridization. Appl. Environ. Microbiol. 66:5116-5122.

Hutchins, D.A., B.J. Campbell, M.T. Cottrell, and S. Takeda. 2001. Response of marine bacterial community composition to iron additions in three ion-limited regimes. Limnol. Oceanogr. 48:168-178.

Cottrell, M.T. and D.L. Kirchman. 2003. Contribution of major bacterial groups to bacterial biomass production (thymidine and leucine incorporation) in the Delaware estuary. Limnol. Oceanogr. 48:168-178.

Kirchman, D.L., L. Yu, and M.T. Cottrell. 2003. Diversity and abundance of uncultured Cytophaga-like bacteria in the Delaware estuary. Appl. Environ. Microbiol. 69:6587-6596.

Cottrell, M.T. and D.L. Kirchman. 2004. Single-cell analysis of bacterial growth, cell size, and community structure in the Delaware estuary. Aquat. Microb. Ecol. 34:139-149.

Malmstrom, R.R., R P. Kiene, M T. Cottrell, and D.L. Kirchman. 2004. Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic Ocean. Appl. Environ. Microbiol. 70:4129-4135.

Yokokawa, T., T. Nagata, M.T. Cottrell, and D.L. Kirchman. 2004. Growth rate of the major phylogenetic bacterial groups in the Delaware estuary. Limnol. Oceanogr. 49:1620-1629.

Cottrell, M.T., L.A. Waidner, L. Yu, and D.L. Kirchman. 2005. Bacterial diversity of metagenomic and PCR libraries from the Delaware River. Environ. Microbiol. 7:1883-1895.

Cottrell, M.T., L. Yu, and D.L. Kirchman. 2005. Sequence and expression analyses of Cytophaga-like hydrolases in a western Arctic metagenomic library and the Sargasso Sea. Appl. Environ. Microbiol. 71:8506-8513.

Kirchman, D.L., A.I. Dittel, R.R. Malmstrom, and M.T. Cottrell. 2005. Biogeography of major bacterial groups in the Delaware estuary. Limnol. Oceanogr. 50:1697-1706.

Kirchman, D. L., R. R. Malmstrom, and M. T. Cottrell. 2005. Control of bacterial growth by temperature and organic matter in the Western Arctic. Deep-Sea Res II 52: 3386-3395.

Elifantz, H., R.R. Malmstrom, M.T., Cottrell, and D.L. Kirchman. 2005. Assimilation of polysaccharides and glucose by major bacterial groups in the Delaware Estuary. Appl. Environ. Microbiol. 71:7799-7805.

Malmstrom, R.R., M.T. Cottrell, H. Elifantz, and D.L. Kirchman. 2005. Biomass production and assimilation of dissolved organic matter by SAR11 bacteria in the Northwest Atlantic Ocean. Appl. Environ. Microbiol. 71 (6):2979-2986.

Helton, R.R., M.T. Cottrell, D.L. Kirchman, and K.E. Wommack. 2005. Evaluation of incubation-based methods for estimating virioplankton production in estuaries. Aquat. Microb. Ecol. 41 (3):209-219.

Cottrell, M.T., A. Mannino, and D.L. Kirchman. 2006. Aerobic anoxygenic phototrophic bacteria in the Mid-Atlantic Bight and the North Pacific Gyre. Appl. Environ. Microbiol. 72: 557-564.

Zhang, Y., N. Jiao, M.T. Cottrell, and D.L. Kirchman. 2006. Contribution of major bacterial groups to bacterial biomass production along a salinity gradient in the South China Sea. Aquat. Microb. Ecol. 43:233-241.

Jones, P.R., M.T. Cottrell, D.L. Kirchman, and S.C. Dexter. 2007. Bacterial community structure of biofilms on artificial surfaces in an estuary. Microbial. Ecol. 53:153-162.

Kirchman, D.L., H. Elifantz, A.I. Dittel, R.R. Malmstrom, and M.T. Cottrell. 2007. Standing stocks and activity of archaea and bacteria in the western Arctic Ocean. Limnol. Oceanogr. 52:495-507.

Lami, R., M.T. Cottrell, J. Ras, O. Ulloa, I. Obernosterer, H. Claustre, D.L. Kirchman, and P. Lebaron. 2007. High abundances of aerobic anoxygenic photosynthetic bacteria in the South Pacific Ocean. Appl. Environ. Microbiol. 73:4198-4205.

Malmstrom, R.R., Straza, T.R.A., M.T. Cottrell, and D.L. Kirchman. 2007. Diversity, abundance, and biomass production of bacterial groups in the western Arctic Ocean. Aquat. Microb. Ecol. 47:45-55.

Michelou, V.K., M T. Cottrell, and D. L. Kirchman. 2007. Light-stimulated bacterial production and amino acid assimilation by cyanobacteria and other microbes in the North Atlantic Ocean. Appl. Environ. Microbiol. 73:5539-5546.

Elifantz, H., A.I. Dittel, M.T. Cottrell, and D.L. Kirchman. 2007. Dissolved organic matter assimilation by heterotrophic bacterial groups in the western Arctic Ocean. Aquat. Microb. Ecol. 50:39-49.

Elifantz, H., L.A. Waidner, V.K. Michelou, M.T. Cottrell, and D.L. Kirchman. 2008. Diversity and abundance of glycosyl hydrolase family 5 in the North Atlantic Ocean. FEMS Microbial Ecol. 63:316-327.

Cottrell, M.T., V.K. Michelou, N. Nemcek, G. DiTullio, and D.L. Kirchman. 2008. Carbon cycling by microbes influenced by light in the Northeast Atlantic Ocean. Aquat. Microb. Ecol. 50:239-250.

Campbell, B. J., L. A. Waidner, M. T. Cottrell, and D. L. Kirchman. 2008. Abundant proteorhodopsin genes in the North Atlantic Ocean. Environ. Microbiol. 10:99-109.

Kirchman, D.L., V. Hill, M.T. Cottrell, R. Gradinger, R.R. Malmstrom, and A. Parker. 2009. Standing stocks, production and respiration of phytoplankton and heterotrophic bacteria in the western Arctic Ocean. Deep-Sea Res II 56:1237-1248. doi:10.1016/j.dsr2.2008.10.018

Straza, T. R. A., M. T. Cottrell, H. W. Ducklow, and D. L. Kirchman.  2009.  Geographic and phylogenetic variation in bacterial biovolume as revealed by protein and nucleic acid staining.  Appl. Environ. Microbiol. 75:4028-4034.

Cottrell, M.T., and Kirchman, D.L.  2009.  Photoheterotrophic microbes in the Arctic Ocean in summer and winter.  Appl. Environ. Microbiol. 75:4958-4966.

Lami, R., M.T. Cottrell, B.J. Campbell, and D.L. Kirchman.  2009.  Light- dependent growth and proteorhodopsin expression by Flavobacteria and SAR11 in experiments with Delaware coastal waters. Environ. Microbiol. Environ. Microbiol. 11: 3201-3209.

Kirchman, D.L., Cottrell, M.T., and C. Lovejoy. 2010. The structure of bacterial communities in the western Arctic Ocean as revealed by pyrosequencing of 16S rRNA genes. Environ. Microbiol. 12:1132-1143. doi:10.1111/j.1462-2920.2010.02154.x

Lehours, A.C., M.T. Cottrell, O. Dahan, D.L. Kirchman, and C. Jeanthon. 2010. Summer distribution and diversity of aerobic anoxygenic phototrophic bacteria in the Mediterranean Sea in relation to environmental variables.   FEMS Microbiol. Ecol. 74:397-409.

Cottrell, M.T., J. Ras, and D.L. Kirchman. 2010. Bacteriochlorophyll and community structure of aerobic anoxygenic phototrophic bacteria in a particle-rich estuary.   ISME J. 4:945-954.

Christman, G.D., M.T. Cottrell, B.N. Popp, and D.L. Kirchman. 2011. Abundance, diversity, and activity of ammonia-oxidizing prokaryotes in the coastal Arctic Ocean in summer and winter. Appl. Environ. Microb. 77:2026-2034.

Cottrell, M.T., and D.L. Kirchman. 2012. Virus genes in Arctic marine bacteria identified by metagenomic analysis.  Aquat. Microb. Ecol. 66:107-116.

 

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